Welcome to the Baumann lab data archive!
“We believe that data archiving and responsible sharing facilitate good science by allowing it to build on previous findings and observations.”
“Data archiving is more than just the right thing to do. It ensures that research data remain accessible and comprehensible in the future. This future often has a different use for the data than their original collectors had in mind.”
By the time a research paper is submitted, a study's data most often reside on somebody's computer, intertwined with analyses - some final, some merely glimpses of ultimately discarded analytical pathways. There are typically myriads of folders, spreadsheets, preliminary figures. A few years later, even the first author of a paper often cannot remember anymore what was what in there. Source data are also often lost simply because computers are discarded, programs move on and are not always backwards compatible.
Data archiving is the solution. It forces the researcher after completion of a project to separate the source (i.e., measurements, observations) and meta-data (time of sample, experiment, depth, etc) from her/his analyses and then clearly annotate the source files to ready them for online storage. This is the best way to prevent what some have called 'conveyor belt science' - i.e., a thirst for data to fuel one particular research angle and paper, followed by raw data being discarded again by the fast pace of time and the subsequent sense of needing more data ...
Always cite data DOI when using data!
| Abbreviated description of source data | Corresponding publication | Data base, link |
|---|---|---|
| Temperature, pH, DO monitoring in Mumford Cove, CT, USA | Data set: 4/2015-12/2022 | BCO-DMO |
| Hatching success, survival, growth in northern stock black sea bass reared at contrasting pCO2 conditions in 2022 | Zavell and Baumann 2024 | BCO-DMO |
| Morphometrics of northern stock black sea bass larvae reared at contrasting pCO2 conditions in 2022 | Zavell and Baumann 2024 | BCO-DMO |
| Juvenile Black sea bass winter growth and lipid accumulation under varying food and temperature conditions - Experiment 1 | Zavell et al. TAFS 2024 | BCO-DMO |
| Temperature-dependence of juvenile Black sea bass growth and lipid accumulation - Experiment 2 | Zavell et al. TAFS 2023 | BCO-DMO |
| Ammodytes dubius reference genome, metadata and individual lcWGS read archives (SRA, n = 315, fastq.gz archives) BioProject PRJNA834854 | Jones et al. ICES JMS 2023 | NCBI |
| Bash markdown for scripts used on the UConn Xanadu HPC cluster for population genomic analyses of sand lance | Jones et al. ICES JMS 2023 | LOCAL |
| Dataset 1: Hatch source sand lance experiments E1 (2018) and E2 (2020) | Baumann et al. MEPS 2022 | BCO-DMO |
| Dataset 2: Morphometrics of sand lance hatchlings in experiments E1 (2018) and E2 (2020) | Baumann et al. MEPS 2022 | BCO-DMO |
| Dataset 3: Unhatched stages of sand lance embryos in experiment E1 (2018) | Baumann et al. MEPS 2022 | BCO-DMO |
| Dataset 4: Chorion thickness of sand lance embryos in experiment E1 (2018) | Baumann et al. MEPS 2022 | BCO-DMO |
| Dataset 5: Hatch source of the CO2 switch trials in experiment E2 (2020) | Baumann et al. MEPS 2022 | BCO-DMO |
| Otolith microstructure of young-of-year Atlantic silversides (Menidia menidia) from Mumford Cove during 2015 | Pringle & Baumann MEPS 2019 | BCO-DMO |
| CO2- and temperature-specific survival of northern sand lance Ammodytes dubius offspring 2016-17 | Murray et al. Cons Phys 2019 | BCO-DMO |
| Morphometrics of northern sand lance Ammodytes dubius offspring reared under factorial CO2 x temperature conditions 2016-17 | Murray et al. Cons Phys 2019 | BCO-DMO |
| Data from the 2015-16 spawning trial in a study of CO2 and temperature-specific reproductive traits in Menidia menidia | Concannon et al. ICES JMS 2021 | BCO-DMO |
| Data on egg production resulting from the 2015-16 spawning trial in a study of CO2 and temperature-specific reproductive traits in Menidia menidia | Concannon et al. ICES JMS 2021 | BCO-DMO |
| Data from the fecundity trial 2018-19 in a study of CO2 and temperature-specific reproductive traits in Menidia menidia | Concannon et al. ICES JMS 2021 | BCO-DMO |
| Egg measurements from the fecundity trial 2018-19 in a study of CO2 and temperature-specific reproductive traits in Menidia menidia | Concannon et al. ICES JMS 2021 | BCO-DMO |
| Survival data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia 2017-2018 | Cross et al. Sci Rep 2019 | BCO-DMO |
| Growth data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia 2017-2018 | Cross et al. Sci Rep 2019 | BCO-DMO |
| Carbonate chemistry data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia 2017-2018 | Cross et al. Sci Rep 2019 | BCO-DMO |
| CO2-specific early life survival and growth of M. menidia from 20 experiments 2012-2017 | Baumann et al. Biol Lett 2018 | Data Dryad |
| CO2 x temperature-specific early life survival and growth of M. menidia from 5 experiments | Murray & Baumann Diversity 2018 | BCO-DMO |
| Fatty acid profiles of M. menidia females and their unfertilized eggs | Snyder et al. JEMBE 2017 | BCO-DMO |
| Survival, length, and growth responses of M. menidia offspring from different females exposed to contrasting CO2 environments | Snyder et al. JEMBE 2017 | BCO-DMO |
| Long-term growth data of juvenile Menidia menidia reared at contrasting CO2 levels | Murray et al. IJMS 2016 | BCO-DMO |
| Combined otolith microstructure and trace element analyses in Pacific bluefin tuna juveniles | Baumann et al. IJMS 2015 | PANGAEA |
| Microsatellites, M. menidia, parentage, survival under high CO2 | Malvezzi et al. EVA 2015 | Data Dryad |
| Growth, survival, hatch, CO2 x oxygen, M. beryllina, M. menidia, Cyprinodon variegatus | Depasquale et al. MEPS 2015 | BCO-DMO |
| Seasonal growth, survival, chemistry, M. menidia, 3 CO2 levels | Murray et al. MEPS 2015 | PANGAEA |
| Survival, growth, Menidia beryllina, carbonate chemistry | Baumann et al. NCLIM 2012 | PANGAEA |
| Vertebral number, Atherinops affinis, adults and offspring from different latitudes along the North-American Pacific | Baumann et al. Copeia 2012 | PANGAEA |
| Thermal reaction norms of growth in Atlantic and Pacific silverside fishes | Baumann & Conover PRSB 2012 | PANGAEA |
| Source data on Baltic and North Sea sprat otolith microstructure analysis, growth, feeding experiments (Baumann, PhD research 2002-06 | Baumann et al. Fish Oceanogr 2006; MEPS 2006; Fish Res 2008; J Sea Res 2009 | PANGAEA |