New Publications

Chilean silversides become famous!

26 July 2026. We are excited to share the great news that Ecology & Evolution just published the first findings from our experimental research on Chilean silversides! The paper describes in detail the rationale, experimental procedures, results and implications of our work in 2023 and 2025 - showing the patterns and statistical tests to support the central claim that the sea silverside Odontesthes regia is now the first documented case of countergradient growth adaptation in a southern hemisphere fish species.

After returning from Chile with samples and data in December 2025, and then combining those with the samples and data from 2023 - it became readily obvious that larvae from the more northern, lower latitude population (Iquique, 20S) grew significantly slower across all tested temperatures than their conspecifics from the more southern, higher latitude population (Dichato, 37S). This pattern of local adaptation is called countergradient variation - and it has previously only been shown in fishes from the northern hemisphere.

Figure showing the temperature dependent growth capacity of silverside larvae
Temperature-dependent growth capacity of O. regia larvae from northern (blue symbols/lines) vs. southern populations (red symbols/lines). Both populations have the same thermal growth maximum between 20 and 23C, but the higher latitude population grows faster at all temperatures than the lower latitude population (modified after Fig.6 in Baumann et al. 2026).

Since this form of climate adaptation appears to be so ubiquitous worldwide, it is therefore likely that it also applies to adaptation of organisms to climate change in time - which is an important and increasingly urgent question for mankind. Or as we write in a more technical synopsis of the study:

We performed common garden experiments on offspring of the sea silverside Odontesthes regia to characterize thermal growth reaction norms of different populations along the Chilean coast. This showed that the species exhibits local adaptation in the form of countergradient growth adaptation because higher-latitude southern populations grew faster at all tested temperatures than their conspecifics from lower-latitude northern populations. We also show that fish from northern populations have on average two fewer vertebrae than their southern conspecifics, which is a form of cogradient adaptation also known as Jordan's Rule in fishes.

Chilean silverside embryos
Chilean silverside embryos on the day of hatching

A grouper on its way north – MEPS publishes Black Sea Bass synthesis paper

16 April 2026. We are excited to share that Marine Ecology Progress Series today published our synthesis paper on Black Sea Bass in Long Island Sound!

The publication combines laboratory research on juvenile and adult black sea bass with ocean and climate modeling to make the case that these fish are already or at some point soon likely to change their habit of moving offshore in winter. This is because inshore waters are warming, so the fish can stay longer in fall and return earlier in spring, but also because the whole Northwest Atlantic shelf is warming, which reduces the distance the fish need to swim to reach overwinter habitat.

Picture of a juvenile black sea bass
A juvenile black sea bass during the 2022 overwinter experiment

In the laboratory, PhD student Max Zavell with the help of his dedicated undergraduate assistants Matt Mouland and David Barnum conducted 2 overwinter experiments on juveniles to simulate their thermal experience of migrating offshore or remaining within Long Island Sound (LIS). Surprisingly, this showed that overwintering inshore caused only minor reductions in survival (100→84%), led to no loss in lipid reserves, but incurred a growth cost in both length and weight.

Thanks to the involvement of two inhouse physical oceanography groups (James O'Donnell, Samantha Siedlecki), we were able to project how mean LIS winter temperatures will increase from 3.2°C to 4.8°C by mid-century, which reduces the average time black sea bass cannot live in LIS by 30%, from 95 to 68d per year. A separate shelf model projected the rapid northward movement of the 10°C isotherm in February bottom temperatures on the Northwest Atlantic shelf - this reduces the overwinter migration distance from  ~600 to ~120 km by mid-century!

Inshore overwintering will become increasingly feasible for black sea bass, perhaps lead to partial migration that furthers the poleward range expansion of this species.

The publication results from a particularly strong interdisciplinary collaboration of no less than 5 research labs: The Baumann and Schultz lab dedicated to fisheries and evolutionary fish ecology, the Matassa Lab with expertise in benthic ecology, the O'Donnell and Siedlecki groups dealing with modeling projections for nearshore and offshore waters in the North-Atlantic. The publication is an example of inclusiveness, given that the list of authors not only includes the graduate student as the lead, but also two particularly engaged undergraduate students, in addition to two post-doctoral researchers and the 5 more senior faculty. 

Plot of black sea bass occurrence in Long Island Sound
A detailed look at how temperature (green line) and black sea bass abundance (circles) have changed over the past 40 years in Long Island Sound (LIS). The circles are scaled to the total number of individuals caught per year and length class (1 cm) during the spring LIS trawl survey (April to June). Blue circles: juveniles (≤14 cm TL); orange circles: adults (≥15 cm TL); green solid line: average annual winter temperature 1991–
2023 (LISICOS ELIS buoy) (modified after Zavell et al. 2026)


Hannes talks black sea bass at the University of British Columbia

Vancouver, 15 March 2026. Hannes spent 3 beautifully intense days at the University of British Columbia, following an invitation by Profs. Andrea Frommel and Colin Brauner to talk at their Comparative Physiology seminar series about our soon to be published synthesis work on black sea bass overwinter migrations. Thank you Andrea, for the comfortable stay at your house and thanks to all the faculty and students who generously shared their time to meet and talk about our respective research experiences. Thank you, Colin, for showing me the aquatic research facilities and the biodiversity center!

Colin Brauner Hannes Baumann Andrea Frommel
Colin Brauner (l.) and Andrea Frommel (r.) were great hosts

Baumann stands at the UBC campus overlooking Vancouver
Standing on the Rose Garden Parkade of the University of British Columbia

  • Baumann, H. and Zavell, M. 2026. A grouper on its way north: Experiments & ocean models suggest that Black Sea Bass will change their winter migrations. Invited talk at the Comparative Physiology Seminar Series, University of British Columbia, Vancouver, Canada, 13 March 2026

Skyline of Vancouver
The Vancouver skyline on 14 March 2026 from Kitsilano Beach

Ambitious Experiment Discovers ‘Flipped’ Genetic Secrets of a Small Fish

A grueling road trip led to an extraordinary experiment at UConn’s Rankin Seawater lab that discovered how inverted chromosomal segments help Atlantic silversides adapt

When a species lives in two distinct types of habitats, individuals with traits better suited to each habitat will thrive and reproduce, naturally selecting descendants with those traits. But what about mobile, aquatic species that live across a broad range of temperatures and latitudes? How do they maintain their genetic differences if individuals are free to mix and interbreed?

New research published on 5 March 2026 in Science finds that chromosomal inversions – which occur when a chunk of chromosome containing tens to thousands of genes breaks off, flips 180 degrees and reattaches to the same chromosome – play a central role in shaping these advantageous adaptations.

Read the whole story at UConn Today (9 March 2026)


Alternative Science magazine cover featuring the Atlantic silverside
Science-inspired alternative of a cover featuring an adult Atlantic silverside

Can adult black sea bass overwinter in Long Island Sound?

18 July 2025. We are thrilled to share that Marine & Coastal Fisheries (an AFS Journal) published today the 3rd chapter of Max Zavell's PhD research! The paper asks the simple but pertinent question

Can adult Black Sea Bass overwinter in Long Island Sound, USA?

The research followed the fate of 2 x 25 adult black sea bass that were angled in Long Island Sound (LIS) in fall 2022 and then kept at realistic winter inshore temperatures in two large flow-through tanks at the Rankin Seawater Laboratory of the University of Connecticut at Avery Point. The authors repeatedly measured survival, length- and weight growth, gonad investment and lipid contents of experimental and wild fish. They cautiously conclude that

"At present, overwintering in LIS appears possible but likely disadvantageous for Black Sea Bass, because offshore winter migration results in greater energy reserves and subsequent reproductive investment. In the future, however, warming coastal waters will continue to shorten the duration of unsuitable winter temperatures, which could become conducive to year-round inshore residency or partial migration patterns in the northern stock of Black Sea Bass."

The article was published Open Access. Congratulations, Max et al.!

Fig1-Survival-Temp-Figure
Dynamic overwinter temperature profile and survival for two black sea bass tanks in 2022/23

Male Black Sea Bass - April2021
Male Black Sea Bass (H.Baumann April 2021)


Could Endangered Sturgeon Make a Comeback in the Connecticut River?

reposted from UConn Today 30 April 2025

Fish that swam next to the dinosaurs are once again appearing in CT waters

 

Pic03-sturgeon-release_UCTedit-1-998x665
After sightings of young sturgeon were reported, CT DEEP researcher Kelli Mosca ’22 MS and Professor Hannes Baumann began researching whether these ancient fish are making a comeback in the Connecticut River. (Credit Jacob Snyder)

By Elaina Hancock

For 160 million years, long-lived and highly migratory Atlantic sturgeons have made their way from the ocean to freshwater spawning grounds inland. The Connecticut River was one of the waterways sturgeon sought out – that is, until they were fished nearly to extinction in the early 20th century.

In 2014, however, researchers from the CT Department of Energy and Environmental Protection (CT DEEP) caught a few juvenile sturgeons in the Connecticut River, implying that sturgeons were spawning there again. More little sturgeon appeared in 2020 and again in 2022, leading some to wonder if this iconic fish that swam next to the dinosaurs was indeed making a comeback in our regional waters.

A new study from UConn professors Hannes Baumann from the Department of Marine Sciences and Eric Schultz from the Department of Ecology and Evolutionary Biology, in collaboration with researchers from CT DEEP including Kelli Mosca ’22 MS, Jacque Roberts, Thomas Savoy and Evan Ingram from Stony Brook University, shows that we have much to learn about sturgeons and that it may not be too late to give them a chance for recovery. Their findings are published in the National Oceanic and Atmospheric Administration’s open access journal, Fishery Bulletin.

Pic04-Jacque-Benway-PIT-tag-1-997x665
CT Deep researchers including Jacque Roberts, pictured here, used acoustic telemetry to track the movements of sturgeons. For telemetry, the fish were equipped with a small transponder and CT DEEP responders mounted throughout the Connecticut River recorded signals whenever fish swam near. (Credit Jacob Snyder)

Baumann says the project started at a conference in 2019, when he connected with researchers at CT DEEP who pitched a potential collaboration with Mosca, who was a CT DEEP seasonal resource assistant at the time and was hoping to pursue a graduate degree and focus her research on sturgeon. Despite these sightings, Baumann says he was skeptical that the fish were having a comeback, but he was interested in the project.

“These fish spawn in freshwater and then they develop until they are about 50 centimeters in size, then they travel to the ocean so if you find a little sturgeon in the Connecticut River, it must have been born there,” says Baumann. “We know there are sturgeon entering the Connecticut River; then the question is, how far do they go?”

For the project, Baumann secured funding from Connecticut Sea Grant, Mosca joined Baumann’s lab, and they started analyzing data to study sturgeon movement in the Connecticut River.

In 1998, sturgeons became a protected species but only after their situation had become dire. They are now heavily regulated, and even getting permits for research is not an easy task, says Baumann.

The researchers took samples of their pectoral fins that indicate the fish’s approximate age. Mosca looked at samples taken from the fish to determine the age,

“Ageing fish is often compared to ageing trees, in the sense that just as trees gain a ring in their trunk for each year they’re alive, a fish adds what we call an annulus (ring) to various hard parts in their body each year they are alive. In sturgeon’s case, they are not fully calcified, meaning there are not many hard bones to choose from to age. However, a small piece of their pectoral fin is hard enough to create those rings and can thankfully regrow so there is no deleterious effect on the fish. I am thankful to have access to such a large archive of these samples, which are rare given the endangered status of this species,” says Mosca.

People have also tagged these fish with acoustic transmitters, a specialized tag that send out a signal which is then picked up by listening equipment called receivers. CT DEEP deploys receivers anchored along the Connecticut River and within Long Island Sound that record the tag data as tagged sturgeon swim by.

The researchers used data on tracked sturgeons over the course of the three-year study, and over that period, sturgeons were detected as far upriver as Wilcox Island (Middletown, at river kilometer 52).

density-plot-and-abacus
Abacus plots (left) allows following the seasonal movement of individual fish along the Connecticut River receiver array, from the mouth of LIS, to the brackish estuary and into the fresh, upper river. A Kernel density plot (right) is used to visualize the habitat occupancy of many telemetered individuals.

“In theory, it’s all very easy, you just have to download the data and look where the sturgeon are,” says Baumann. “In practice, there are lots of statistics and analytical steps to properly assess these data. There were something like 1.5 million detections, over the three years in total, so 1.5 million rows of data, where every ping was a sturgeon somewhere. This corresponded to 85 individuals tracked over three years.”

Tracking animals in this way is called acoustic telemetry, and Baumann says the technology has profoundly changed our understanding of animal movements in the wild. There were some surprises in this one, he notes.

“Instead of just episodic accounts of single individuals, this study stands out for the large number of tracked fish,” says Baumann. “It showed that sturgeons generally arrive in the estuary in spring and leave in fall and that most stay in the brackish estuary. But intriguingly, a lot of the fish are indeed making these long upstream excursions into the freshwater. Why would they do this?”

Baumann says that the initial, most intuitive explanation of the fish displaying spawning migrations appeared unlikely after closer inspection. This is because most of the fish were not of adult size and age and, therefore, too young to spawn.

“We always thought Atlantic sturgeon are only in the estuary when they are young, and it is only when they want to spawn that they go into the freshwater. But that appears to be false. Our study shows that almost every size of sturgeon travelled into the freshwater portion of the Connecticut River. We had two individuals in our data set who were 18 years old. Most of the fish that we caught were younger than 12 years, and the average was about eight years, so they’re youngsters,” says Baumann.

The data therefore revealed that Atlantic sturgeons are using the entire Connecticut River, not just the estuary. Baumann says their working theory is that the fish are exploring other areas to find food, since the estuary can become crowded in the summer.

“In the paper, we advanced a theory that some of these Atlantic sturgeons move further up the river due to competition because it’s getting too crowded. The gist is we now know that we need to protect sturgeons at least during these important summer months, when they are in the entire Connecticut River.”

These findings are promising and important for ensuring measures are in place to help give the sturgeons the best chance possible at making a recovery. Though Baumann cannot say with certainty that the population is growing, a hopeful indication is that sightings of juveniles likely born in the River are happening more frequently.

“The sightings are still very sporadic and sort of ephemeral, but perhaps it’s a start.”

Protecting a highly mobile species like sturgeons can be tricky because they recognize no borders. Therefore, it takes national, federal, and international cooperation, but other measures are also important to ensure people are aware of their presence to help reduce accidental boat strikes or bycatch in commercial fisheries.

“From a logical perspective, they have been fished to quasi extinction in the beginning of the 20th century. Indeed, it would be a small miracle if these fish came back,” says Baumann. “At the end of the day, they made it 160 million years, and we need to just give them a chance to make it another 100. It doesn’t take much. It does take time, but if we allow it, I’m convinced that nature will find a way.”

Length-distr-background
Length (upper panel) and age distributions (lower panel) of Atlantic sturgeon in Long Island Sound and the Connecticut River (modified after Mosca et al. 2025)

What sand lance species inhabits the Hudson Bay?

25 January 2025. We are proud to share that the journal Environmental Biology of Fishes just published our latest sand lance research - this time involving specimen samples from the Canadian Arctic! And it's a story that has all the hallmarks of how scientist collaborate and how such collaborations can evolve and widen over time.

LucasJones-round

About 5 years ago, we began to receive samples of sand lance from Canadian colleagues who had collected them in places such as the Grand Banks, the Gulf of Saint Lawrence and even in coastal waters of western Greenland. When these samples were compared genetically to sand lance in the south (e.g. Stellwagen Bank) study, it revealed the existence of two large population clusters of Northern sand lance (Ammodytes dubius) on the Northwest Atlantic shelf (Jones et al. 2023). It was also the first genetic study of Lucas Jones, and it earned him his Masters degree in 2022.

A few years later, our Canadian colleague Caroline Bouchard approached us with a related problem. They had collected larval sand lance samples by ship tows in the Hudson Bay - the famously vast, shallow shelf sea in the Canadian Arctic - but there was no way to identify them to species level with traditional tools. If we might be interested to have a - genomic - look?

Lucas - now a PhD student - sure was. After DNA was extracted and sequenced in the same way as with the other samples before (i.e., low coverage whole genome sequencing), he applied his already developed bioinformatic pipeline to answer the question, which sand lance species inhabits the Hudson Bay?

So here it is. As the now published, first chapter of his PhD research reports - the findings were surprisingly unequivocal. All samples clustered with (i.e., were genomically indistinguishable from) the Northern sand lance (A. dubius).

This, we argue in the paper, demonstrated two things: First, the northern genotype of A. dubius forms a genetically homogeneous population across an astoundingly large geographic range of > 2 million km2, and second, there does not (yet?) appear to be any sign of Pacific sand lance species mixing in with the Atlantic species in this region.

Congrats, Lucas, and fingers crossed for your next discoveries of sand lance genomics!



HudsonBayAmmodytes
Map of the Canadian Arctic with the Hudson Bay and Hudson Strait. Unknown Ammodytes spp. (red circles) were sampled 2010–2018 and identified as A. dubius using whole genome sequencing (gif turning into blue circles). Known congeners from Jones et al. (2023) with blue circles/shading showing the putative range and sampling sites for Northern sand lance (A. dubius) comprised of a northern cluster (NC, dark blue circles) and a southern cluster (SC, light blue circles), the grey square denoting American sand lance (A. americanus) sampled from a nearshore site in the Gulf of Maine, and yellow diamond/shading denoting the putative range/sampling site for the Pacific sand lance (A. personatus). Green shading depicts putative occurrence of the Arcto-Pacific congener A. hexapterus, which has recently invaded the Canadian Arctic (green circles, Falardeau et al. 2017)

Fishery Bulletin publishes black sea bass diet metabarcoding study

22 November 2024. We are happy to share that our paper on black sea bass stomach content metabarcoding has been published today in the traditional NOAA journal Fishery Bulletin. Our study used black sea bass juveniles caught in Mumford Cove to study their diet via a molecular approach known as metabarcoding. This method often detects rare or soft-bodied prey better than traditional morphological content analyses. We found that small, newly settled black sea bass eat mostly shrimp, but also many softbodied polychaetes. And weirdly, they seem to like one particular kind of (invasive) amphipod. Only larger juveniles seem to add fish to their diet.

Our study is a great first collaboration between our departments genomic experts (Ann Bucklin, Paola Batta-Lona) and the Evolutionary Fish Ecology Lab. The first product of our collaborative efforts has seen the light!

Fishery Bulletin is the 143 years old peer-reviewed journal managed and published by the National Marine Fisheries Service (NMFS) of the National Ocean and Atmospheric Administration (NOAA). It publishes Open Access at no costs to authors. Click the link below to download the paper.



BSB-COI-summary-web
Composition of prey detected in samples from stomachs of juvenile black sea bass (Centropristis striata), collected in Mumford Cove off Connecticut in August 2020, through metabarcoding with (A) the mitochondrial cytochrome c oxidase subunit I (COI) gene region and (B) the V9 hypervariable region of 18S rRNA. Bars represent the total number of COI and V9 gene sequences identified for each of 6 and 10 major prey taxa in DNA samples from 35 and 99 stomachs, respectively. In panel A, lists / pictures of the major prey species and their relative proportions for each prey taxon are provided (modified after Figure 1 in Batta-Lona et al. 2025)

High CO2 tolerance of Black Sea Bass embryos / larvae – just out!

12 June 2024. We are excited to share that Environmental Biology of Fishes just published our study on the CO2 sensitivity of Black Sea Bass early life stages! The experimental work was part of Max Zavell's PhD-research and required the development of new approaches for obtaining spawning adults, new rearing methods, and new techniques for quantifying hatchlings and feeding larvae.

In the end, our research extends earlier experimental work to show that Black Sea Bass embryos and larvae are surprisingly tolerant to even extreme pCO2 conditions - which means that this species is likely resistant to the direct (!) effects of ocean acidification. Scientifically, this is intriguing because it points to some form of pre-adaptation that adults confer to their offspring in a manner we just don't understand yet.

Congrats, Max, to another chapter of your thesis published!


BSB-ELS-Development-Panel-red
Black Sea Bass early life stages, developing rapidly at 20C

Fig1A-Hatch-Survival
Hatching success of black sea bass embryo exposed to different pCO2 conditions (modified after Zavell & Baumann 2024)

TAFS publishes our first Black Sea Bass experiment paper!

Fig01---BSB-CTDEEP-trawl-survey-count_new-copy
Black Sea Bass have rapidly increased in abundance particularly in Long Island Sound (LIS Trawl survey data).

 

27 December 2023. We are excited to announce that Transactions of the American Fisheries Society just published our first large experimental study on Black Sea Bass overwintering! The work is part of Max Zavell's PhD research and reports on temperature- and food-ration dependent overwinter growth in Black Sea Bass juveniles from Long Island Sound. We reared juveniles individually in two separate experiments, one applying three static temperature treatments (6, 12, 19°C) and another using a seasonal temperature profile to mimic the thermal experience of juveniles emigrating to their offshore overwintering grounds coupled with various food treatments.

We found that Black Sea Bass juveniles showed positive overwinter growth even at temperatures as low as 6°C. However, the best temperature for growth, survival, and lipid accumulation was 12°C, which is close to the presumed conditions at offshore overwintering habitats of this species.

Congratulations, Max, to this great paper! Also, congrats to undergraduate student Matthew Mouland, who helped tirelessly with the rearing and has now deservedly become a co-author.



Fig03---Exp1-GRTL-SGR-Cons
(A) total length (TL) growth (mm/day), (B) weight-specific growth (%/day), and (C) growth efficiency (%) of juvenile Black Sea Bass reared at 6°C (blue circles), 12°C (green circles), and 19°C (orange circles) for 42–78 days. Each symbol represents an individual fish.

BlackSeaBass_Mar2022_01
Juvenile Black Sea Bass rearing setup in March 2022 in the Rankin Lab. Each white bucket contained an individual fish.