---

2024

• Brennan, R.S., deMayo, J.A., Finiguerra, M., Baumann, H., Dam, H., and Pespeni, M. H.
  Complementary genetic and epigenetic changes facilitate rapid adaptation to multiple global change stressors
  PNAS (in review)

• Zavell, M.D.*, Mouland, E.P.*, Barnum, D.L.*, Matassa, C.M., Schultz, E.T., and Baumann, H.
  Can adult Black Sea Bass overwinter in Long Island Sound, USA?
  Marine and Coastal Fisheries (in review)

• Schembri, S., Bouchard, C., Jones, L.*, Baumann, H., and Maps, F.
  Larval and juvenile fish assemblages in the Hudson Bay system
  Arctic Research (in review)

• Mosca, K.C.*, Savoy, T., R. Benway, J., Ingram, E.C., Schultz, E.T., and Baumann, H.
  Age structure and seasonal movement patterns of Atlantic sturgeon aggregating in eastern Long Island Sound and the Connecticut River
  Fishery Bulletin (in revision)

• Jones, L.F.*, Schembri, S., Bouchard, C., and Baumann, H.
  Molecular identification of larval sand lance (Ammodytes spp.) caught in the Hudson Bay System 2010-2018
  Environmental Biology of Fishes (resubmitted)

• Batta-Lona, P.G., Wojcicki, M.L., Zavell, M.D.*, Bucklin, A., and Baumann, H. (2025)
  Using DNA metabarcoding to reveal prey diversity in diets of juvenile black sea bass (Centropristis striata) in Long Island Sound in the Northwest Atlantic Ocean.
  Fishery Bulletin 123:22-33

• Zavell, M.D.* and Baumann, H. (2024)
  Resiliency of Black Sea Bass, Centropristis striata, early life stages to future high CO₂ conditions
  Environmental Biology of Fishes 107:677–691

• Jacobs, A., Velotta, J.P., Tigano, A., Wilder, A.P., Baumann, H., and Therkildsen, N.O. (2024)
  Temperature-dependent gene regulatory divergence underlies local adaptation with gene flow in the Atlantic silverside
  Evolution 78:1133–1149

• Zavell, M.D.*, Mouland, M.E.P., Matassa, C.M., Schultz, E.T., and Baumann, H. (2024)
  Temperature- and ration-dependent winter growth in Northern stock Black Sea Bass juveniles
  Transactions of the American Fisheries Society 153:163-179

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2023

• deMayo, J., Finiguerra, M., Norton, L., Park, G., Brennan, R., Pespeni, M., Baumann, H., and Dam, H. (2023)
  Simultaneous warming and acidification limit population fitness and reveal phenotype costs for a marine copepod
  Proceedings of the Royal Society:B 290:20231033

• Jones, L.F.*, Lou, R.N., Murray, C.S., Robert, D., Bourne, C.M., Bouchard, C., Kučka, M., Chan, Y.F., Carlon, D.B., Wiley, D.N., Therkildsen, N.O., and Baumann, H. (2023)
  Two distinct population clusters of Northern sand lance (Ammodytes dubius) on the Northwest Atlantic shelf revealed by whole genome sequencing
  ICES Journal of Marine Science 80:122-132 | Press release | Hakai Magazine

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2022

• Reid S. Brennan, R.S., deMayo, J.A., Dam, H.G., Finiguerra, M., Baumann, H., Buffalo, V., and Pespeni, M.H. (2022)
  Experimental evolution reveals the synergistic genomic mechanisms of adaptation to ocean warming and acidification in a marine copepod
  Proceedings of the National Academy of Sciences 119:e2201521119

• Akopyan, M., Tigano, A., Jacobs, A., Wilder, A.P., Baumann, H., and Therkildsen N.O. (2022)
  Comparative linkage mapping uncovers massive chromosomal inversions that suppress recombination between locally adapted fish populations
  Molecular Ecology 31:3323-3341

• Baumann, H., Jones, L.F.*, Murray, C.S., Siedlecki, S.A., Alexander, M., and Cross, E.L. (2022)
  Impaired hatching exacerbates the high CO₂ sensitivity of embryonic sand lance, Ammodytes dubius
  Marine Ecology Progress Series 687:147-162 | UConn Today press release | OCB highlights

• Suca, J.J., Ji, R., Baumann, H., Pham, K., Silva, T.L., Wiley, D.N., Feng, Z., and Llopiz, J. (2022)
  Larval transport pathways from three prominent sand lance habitats in the Gulf of Maine
  Fisheries Oceanography 31:333-352

• Brennan, R.S., deMayo, J.A., Dam, H.G., Finiguerra, M., Baumann, H., and Pespeni, M.H. (2022)
  Loss and recovery of transcriptional plasticity after long-term adaptation to global change conditions in a marine copepod
  Nature Communications 13:1147

• Baumann, H. (2022)
  Chapter 11: Fish Ecology
  In: Pan, J. and Pratolongo, P.D. (eds) Marine Biology: a functional approach to the oceans and their organisms. CRC Press/Science Publishers (Taylor & Francis)
  ISBN 978-0-367-02498-7 (hardback), 978-0-429-39924-4 (e-book) | published March 3rd 2022

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2021

• Concannon, C.A.*, Cross, E.L., Jones, L.F.*, Murray, C.S., Matassa, C. McBride, R.S., and Baumann, H. (2021)
  Temperature-dependent effects on fecundity in a serial broadcast spawning fish after whole-life high-CO₂ exposure
  ICES Journal of Marine Science 78:3724–3734

• Dam, H.G., deMayo, J.A., Park, G., Norton, L., He, X., Finiguerra, M., Baumann, H., Brennan, R.S., and Pespeni, M.H. (2021)
  Rapid, but limited, zooplankton adaptation to simultaneous warming and acidification
  Nature Climate Change 11:780–786

• Rooker, J.R., Wells, D.R.J., Block, B.A., Liu, H., Baumann, H., Chiang, W.-C., Zapp, M., Miller, N.R., Ohshimo, S., Tanaka, Y., Dance, M.A., Dewar, H., Snodgrass, O.E., and Shiao, J.-C. (2021)
  Natal origin and age-specific egress of Pacific bluefin tuna from coastal nurseries revealed with geochemical markers
  Scientific Reports 11:14216

• Suca, J., Wiley, D., Silva, T., Robuck, A., Richardon, D., Glancy, S., Clancey, E., Giandonato, T., Solow, A.R., Thompson, M.A., Hong, P., Baumann, H., Kaufman, L., and Llopiz, J.K. (2021)
  Sensitivity of sand lance to shifting prey and hydrography indicates forthcoming change to the Northeast US shelf forage fish complex
  ICES Journal of Marine Sciences 78:1023–1037

• Baumann, H. Suca, J.J., Wiley, D.N., and Llopiz, J.K. (2021)
  Origin and fate of sandlance Ammodytes dubius offspring from Stellwagen Bank, inferred from Lagrangian drift simulations.
  BOEM white paper in partial fulfillment to grant #M17PG0019 Productivity and ecology of sand habitats

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2020

• Schwemmer, T.S., Baumann, H., Murray, C.S.*, Molina, A.I., and Nye, J. (2020)
  Synergistic metabolic responses of embryos, but not larvae, of a coastal forage fish to acidification and hypoxia
  Journal of Experimental Biology 223:jeb228015

• Silva, T., Wiley, D., Thompson, M., Hong, P., Kaufman, L., Suca, J., Llopiz, J., Baumann, H. and Fay, G. (2020)

High collocation of sand lance and top predators in the southwestern Gulf of Maine: implications for conservation and management
Conservation Science and Practice 3:e274

• Murray, C.S.* and Baumann, H. (2020)

Are long-term growth responses to elevated pCO₂ sex-specific in fish?
PLOS One 15:e0235817 | Press release | NSF news

• Staudinger, M., Goyert, H., Suca, J., Coleman, K., Welch, L., Llopiz, J., Wiley, D., Altman, I., Applegate, A., Auster, P., Baumann, H., Beaty, J., Boelke, D., Kaufman, L., Loring, P., Moxley, J., Paton, S., Powers, K., Richardson, D.E., Robbins, J., Runge, J., Smith, B.E., Spiegel, C., and Steinmetz, H. (2020)
  The role of sand lances (Ammodytes sp.) in the Northwest Atlantic Ecosystem: a synthesis of current knowledge with implications for conservation and management
  Fish and Fisheries 21:522-556

• Therkildsen, N.O. and Baumann, H. (2020)
  A comprehensive non-redundant reference transcriptome for the Atlantic silverside Menidia menidia
  Marine Genomics 53:100738

---

2019

• Pringle, J.W.* and Baumann, H. (2019)
  Otolith-based growth reconstructions in young-of-year Atlantic silversides (Menidia menidia) and their implications for sex-selective survival
  Marine Ecology Progress Series 632:193-204

• Breitburg, D.L., Baumann, H., Sokolova, I.M., and Frieder, C.A. (2019)
  Chapter 6. Multiple stressors – forces that combine to worsen deoxygenation and its effects.
  In: Ocean deoxygenation: everyone’s problem. Causes, impacts, consequences and solutions
  International Union for Conservation of Nature (IUCN). Report xxii, 562p.

• Cross, E.L., Murray, C.S.*, and Baumann, H. (2019)
  Diel and tidal pCO₂ × O₂ fluctuations provide physiological refuge to a coastal forage fish
  Scientific Reports 9:18146

• Munday, P.L., Rummer, J.L. and Baumann, H. (2019)
  Chapter 10. Adaptation and evolutionary responses to high CO₂ pp 369-395
  In: Grosell, M. Munday, P.L., Brauner, C. and Farell, A.P. (eds) Fish Physiology Volume 37: Carbon Dioxide Elsevier (Dec 10th, 2019)

• Murray, C.S.*, Wiley, D., and Baumann, H. (2019)
  High sensitivity of a keystone forage fish to elevated CO₂ and temperature
  Conservation Physiology 7:1-12

• Therkildsen, N.O., Wilder, A.P., Conover, D.O., Munch, S.B., Baumann, H., and Palumbi, S.R. (2019)
  Contrasting genomic shifts underlie parallel phenotypic evolution in response to fishing
  Science 365:487-490
  Related perspective: Fishing for answers Science 365: 443-444 | Cornell Press release

• Baumann, H. (2019)
  Experimental assessments of marine species sensitivities to ocean acidification and its co-stressors: how far have we come?
  Canadian Journal of Zoology 97:399-408

• Snyder, J.T.*, Whitney, M.M., Dam, H.G., Jacobs, M.W., and Baumann, H. (2019)
  Citizen science observations reveal rapid, multi-decadal ecosystem changes in eastern Long Island Sound
  Marine Environmental Research 146: 80-88
  News coverage: TheConversation New Haven Register UConn Today WSHU public radio

---

2018

• Baumann, H., Cross, E.L., and Murray, C.S. (2018)
  Robust quantification of fish early life CO₂ sensitivities via serial experimentation
  Biology Letters 14:20180408

• Murray, C.S. and Baumann, H. (2018)
  You better repeat it: complex temperature × CO₂ effects in Atlantic silverside offspring revealed by serial experimentation
  Diversity 10:69

• Madigan, D.J., Li, M., Runsheng, Y., Baumann, H., Snodgrass, O.E., Dewar, H., Krabbenhoft, D.P., Baumann, Z., Fisher, N.S., Balcom, P., and Sunderland, E.M. (2018)
  Mercury stable isotopes reveal influence of foraging depth on mercury concentrations and growth in Pacific bluefin tuna
  Environmental Science & Technology 52:6256-6264

• Baumann, H., Parks, E.M.*, and Murray, C.S.* (2018)
  Starvation rates in larval and juvenile Atlantic silversides (Menidia menidia) are unaffected by high CO₂ conditions
  Marine Biology 165:75-83

• Cross, E. L., Harper, E. M. and Peck, L. S. (2018)
  A 120-year record of resilience to environmental change in brachiopods
  Global Change Biology 24:2262-2271

• Snyder, J.T.*, Murray, C.S.*, and Baumann, H. (2018)
  Potential for maternal effects on offspring CO₂ sensitivities in the Atlantic silverside (Menidia menidia)
  Journal of Experimental Marine Biology and Ecology 499:1-8

• Baumann, H. and Smith, E. (2018)
  Quantifying metabolically-driven pH and oxygen fluctuations in US nearshore habitats at diel to interannual time-scales
  Estuaries & Coasts 41:1102-1117

---

2017

• Dam, H.G. and Baumann, H. (2017)
  Climate change, zooplankton and fisheries
  In: Phillips B, Perez-Ramirez M (eds) The impacts of climate change on fisheries and aquaculture. Wiley/Blackwell (September 2017)

• Baumann, Z., Mason, R.P., Conover, D.O., Balcom, P., Chen, C.Y., Buckman, K.L., Fisher, N.S., and Baumann, H. (2017)
  Mercury bioaccumulation increases with latitude in a coastal marine fish (Atlantic silverside Menidia menidia)
  Canadian Journal of Fisheries and Aquatic Sciences 74:1009-1015

• Murray, C.S.*, Fuiman, L., and Baumann, H. (2017)
  Consequences of elevated CO₂ exposure across multiple life stages in a coastal forage fish
  ICES Journal of Marine Science 74:1051-1061

---

2016

• Gobler, C.J. and Baumann, H. (2016)
  Hypoxia and acidification in ocean ecosystems: Coupled dynamics and effects on marine life
  Biology Letters 12:20150976

• Baumann, H. (2016)
  Combined effects of ocean acidification, warming, and hypoxia on marine organisms
  Limnology and Oceanography e-Lectures 6:1-43

• O'Leary, S.J., Martinez, C.M., Baumann, H., Abercrombie, D.L., Conover, D.O., Poulakis, G.R., Murray, C.H., Feldheim, K.A., Chapman, D.D. (2016)
  Population genetics and geometric morphometrics of the Key silverside, Menidia conchorum, a marine fish in a highly fragmented inland habitat
  Bulletin of Marine Science 92:33-50

---

2015

• Yencho, M.A, Jordaan, A., Cerrato, R.M., Baumann, H., and Frisk, M.G. (2015)
  Growth and mortality in coastal populations of Winter Flounder: implications for recovery of a depleted population
  Marine and Coastal Fisheries 7: 246-259.

• Peck, M.A., Baumann, H., Clemmesen, C., Herrmann, J.-P., Moyano, M., and Temming A. (2015)
  Calibrating and comparing somatic-, nucleic acid-, and otolith-based indicators of growth and condition in young juvenile European sprat (Sprattus sprattus)
  Journal of Experimental Marine Biology and Ecology 147: 217-225.

• Baumann, H., Wells, R.J.D., Rooker, J.R., Zhang, S., Baumann, Z., Madigan, D.J., Dewar, H., Snodgrass, O.E., and Fisher, N. (2015)
  Combining otolith microstructure and trace elemental analyses to infer the arrival of juvenile Pacific bluefin tuna in the California Current Ecosystem
  ICES Journal of Marine Science 72: 2128-2138.

• Malvezzi, A.J.*, Murray, C.M., Feldheim, K.A., Dibattista, J.D., Garant, D., Gobler, C.J., Chapman, D.D., and Baumann, H. (2015)
  A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification
  Evolutionary Applications 8: 352-362 | Press Release

• Depasquale, E.*, Baumann, H., and Gobler, C.J. (2015)
  Variation in early life stage vulnerability among Northwest Atlantic estuarine forage fish to ocean acidification and low oxygen
  Marine Ecology Progress Series 523: 145–156

• Baumann, H., Wallace, R.B., Tagliaferri, T., and Gobler, C.J. (2015)
  Large natural pH, CO₂ and O₂ fluctuations in a temperate tidal salt marsh on diel, seasonal, and interannual time scales
  Estuaries & Coasts 38: 220–231

---

2014

• Murray, C.M.*, Malvezzi, A., Gobler, C.J., and Baumann, H. (2014)
  Offspring sensitivity to ocean acidification changes seasonally in a coastal marine fish
  Marine Ecology Progress Series 504: 1-11 (Feature Article)

• Brown, E.E., Baumann, H., and Conover, D.O. (2014)
  Temperature and photoperiod effects on sex determination in a fish
  Journal of Experimental Marine Biology and Ecology 461:39-43

• Pfister, C., Esbaugh, A., Frieder, C., Baumann, H., Bockmon, E., White, M., Carter, B., Benway, H., Blanchette, C. Carrington, E., McClintock, J., McCorkle, D., McGillis, W., Mooney, T., Zivieri, P. (2014)
  Detecting the unexpected: A research framework for ocean acidification
  Environmental Science & Technology 48: 9982-9994

• Wallace, R.B., Baumann, H., Grear, J., Aller, R.C., and Gobler, C.J. (2014)
  Coastal ocean acidification: The other eutrophication problem
  Estuarine, Coastal, and Shelf Science 148: 1-13.

• Gobler, C.J., Depasquale, E., Griffith, A., and Baumann, H. (2014)
  Hypoxia and acidification have additive and synergistic negative effects on the growth, survivial, and metamorphosis of early life stage bivalves
  PLOS One 9(1): e83648. | Press Release

---

2013

• Baumann, H. and Doherty, O. (2013)
  Decadal changes in the world’s coastal latitudinal temperature gradients
  PLOS One 8:e67596

• Baumann, Z., Casacuberta, N., Baumann, H., Masqué, P., and Fisher, N. S. (2013)
  Natural and Fukushima-derived radioactivity in macroalgae and mussels along the Japanese shoreline
  Biogeosciences 10: 3809 – 3815

• Baumann, H., Sutherland, S.J., and McBride, R.S. (2013)
  Longitudinal length back-calculations from otoliths and scales differ systematically in haddock
  Transactions of the American Fisheries Society 142: 184-192

---

2012

• Buesseler, K.O., Jayne, S.R., Fisher, N.S., Rypina, I.I., Baumann, H., Baumann, Z., Breier, C.F., Douglass, E.M., George, J., Macdonald, A.M., Miyamoto, H., Nishikawa, J., Pike, S.M., Yoshida, S. (2012)
  Fukushima-derived radionuclides in the ocean and biota off Japan
  Proceedings of the National Academy of Sciences 109: 5984-5988

• Baumann, H., Talmage, S.C., and Gobler, C.J. (2012)
  Reduced early life growth and survival in a fish as a direct response to elevated CO₂ levels
  Nature Climate Change 2: 38-41

• Voss, R., Peck, M.A., Hinrichsen, H.-H., Clemmesen, C., Baumann, H., Stepputtis, D., Bernreuther, M., Schmidt, J.O., Temming, A., and Koester, F.W. (2012)
  Recruitment processes in Baltic sprat – a re-evaluation of GLOBEC-Germany hypotheses
  Progress in Oceanography 107:61-79

• Peck, M.A., Baumann, H., Bernreuther, M., Clemmesen, C., Herrmann, J.-P., Haslob, H., Kanstinger, P., Koester, F., Petereit, C., Temming, A., and Voss, R. (2012)
  The ecophysiology of Sprattus sprattus in the Baltic and North Seas
  Progress in Oceanography 103:42-57.

• Günther, C.C., Temming, A., Herrman, J.-P., Huwer B., Baumann H., Clemmesen-Bockelmann, C., Möllmann, C. (2012)
  A novel length back-calculation approach accounting for ontogenetic changes in the fish length – otolith size relationship during the early life of sprat (Sprattus sprattus L.)
  Canadian Journal of Fisheries and Aquatic Sciences 69:1-16

• Brown, E.E., Baumann, H., and Conover, D.O. (2012)
  Absence of countergradient and cogradient variation in an oceanic silverside, the California grunion (Leuresthes tenuis)
  Marine Ecology Progress Series 461:175-186

• Baumann, H., Rosales-Casián, J.A., and Conover, D.O. (2012)
  Contrasting latitudinal variations in vertebral number and sex determination in Pacific versus Atlantic silverside fishes
  Copeia 2012: 342-351

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2003-2011

• Baumann, H. and Gagliano, M. (2011)
  Changing otolith:fish size ratios during settlement in two tropical damselfishes
  Helgoland Marine Research 65: 425-429

• Baumann, H. and Conover, D.O. (2011)
  Adaptation to climate change: contrasting patterns of thermal-reaction-norm evolution in Pacific vs. Atlantic silversides
  Proceedings of the Royal Society:B 278: 2265-2273

• Conover, D. O. and Baumann, H. (2009)
  The role of experiments in understanding fishery-induced evolution
  Evolutionary Applications 2: 276-290

• Baumann, H., Voss, R., and Malzahn, A., and Temming, A. (2009)
  The German Bight (North Sea) is a nursery area for both locally and externally produced sprat juveniles
  Journal of Sea Research 61:234-243

• Baumann, H., Voss, R., Hinrichsen, H.-H., Mohrholz, V., Schmidt, J.O., and Temming, A. (2008)
  Investigating the selective survival of summer- over spring-born sprat, Sprattus sprattus, in the Baltic Sea
  Fisheries Research 91: 1-14

• Stransky, C., Baumann, H., Fevolden, S.-E., Harbitz, A., Høie, H., Nedreass, K.H., Salberg, A.-B., Skarstein, T.H. (2007)
  Separation of Norwegian coastal cod and Northeast Arctic cod by outer otolith shape analysis
  Fisheries Research 89: 159-166

• Baumann, H., Peck, M.A., Götze, E., and Temming, A. (2007)
  Starving early juvenile sprat, Sprattus sprattus L., in Western Baltic coastal waters: evidence from combined field and laboratory observations in August/September 2003
  Journal of Fish Biology 70: 853-866

• Baumann, H., Hinrichsen, H.-H., Voss, R., Stepputtis, D., Grygiel, W., Clausen, L.W., and Temming, A. (2006)
  Linking growth- to environmental histories in central Baltic young-of-the-year sprat, Sprattus sprattus: an approach based on otolith microstructure analysis and hydrodynamic modeling
  Fisheries Oceanography 15: 465-476

• Baumann, H., Gröhsler, T., Kornilovs, G., Makarchouk, A., Feldman, V., and Temming, A. (2006)
  Temperature-induced regional and temporal growth differences in Baltic young-of-the-year sprat, Sprattus sprattus
  Marine Ecology Progress Series 317: 225-236

• Baumann, H., Hinrichsen, H.-H., Moellmann, C., Koester, F.W., Malzahn, A.M., and Temming, A. (2006)
  Recruitment variability in Baltic sprat, Sprattus sprattus, is tightly coupled to temperature and transport patterns affecting the larval and early juvenile stages
  Canadian Journal of Fisheries and Aquatic Sciences 63: 2191-2201

• Voss, R., Clemmesen, C., Baumann, H., and Hinrichsen, H.-H. (2006)
  Baltic sprat larvae: Coupling food availability, larval condition and survival
  Marine Ecology Progress Series 308: 243-254

• Hinrichsen, H.-H., Kraus, G., Voss, R., Stepputtis, D., and Baumann, H. (2005)
  The general distribution pattern and mixing probability of Baltic sprat juvenile populations
  Journal of Marine Systems 58: 52-66

• Baumann, H., Peck, M.A., and Herrmann, J.-P. (2005)
  Short-term decoupling of otolith and somatic growth induced by food level changes in post-larval Baltic sprat, Sprattus sprattus
  Journal of Marine and Freshwater Research 56: 539-547

• Baumann, H., Pepin, P., Davidson, F.J.M., Mowbray, F., Schnack, D., and Dower, J.F. (2003)
  Reconstruction of environmental histories to investigate patterns of larval radiated shanny (Ulvaria subbifurcata) growth and selective survival in a large bay of Newfoundland
  ICES Journal of Marine Science 60: 243-258