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25 June 2025. Our lab's black sea bass experts, PhD student Hannah Roby and undergraduate assistant Kaitlyn Tripp, presented first findings of their CT SeaGrant funded research on black sea bass diets at the summer meeting of the Southern New England Chapter of the American Fisheries Society in New Britain, CT. Hannah's analyses of black sea bass stomach contents are highly anticipated, because they will allow to better understand how the food web in Long Island Sound will be impacted by the explosive abundance increase of this fish.
In addition, Hannah received an award (Norbert Stamp Student Award) for her ongoing work with anglers in and around Long Island Sound.
Well done, all, good job spreading the word about the work we do!
David Bethoney giving Hannah the Norbert Stamp student award
Roby, H., Tripp, K., Matassa, C., Batta-Lona, P., and Baumann, H. 2025. Digesting the evidence: Black sea bass and trophic impacts in Long Island Sound. Oral presentation. SNEC AFS 2025 Summer Science Meeting 2025, New Britain, CT, 25 June 2025
Tripp, K., Roby, H., and Baumann, H. 2025. Morphometric relationships between Black Sea Bass and their crustacean prey in Long Island Sound. Oral presentation. SNEC AFS 2025 Summer Science Meeting 2025, New Britain, CT, 25 June 2025
20 June 2025. Members of the Baumann lab just returned from the 48th Annual Larval Fish Conference, which was organized this year by Early Life History Section members from the Université du Quebec in Quebec City. This small, international conference convened experts from 16 countries and all career stages dedicated to better understand processes governing fish early life stages (eggs, embryos, larvae, juveniles).
Le Chateau Fontenac is one of Quebec City's most distinctive landmarks
This year, our lab was represented by Hannes, Lucas, Emma, and Vicki - with the latter 3 doing a great job communicating the early findings of their PhD theses research via oral and poster presentations. Lucas shared genomic findings of sand lance in the Hudson Bay and from CO2-sensitivity experiments. Emma presented first insights of experimental research on the inshore sand lance species, and Vicki showed that in- and offshore sandlance species might mix more than previously thought. In addition, Emma helped organize and conduct a well received panel discussion for early career scientists about the art of reviewing and publishing.
Quebec is an incredibly picturesque, historic city - and all of us were lucky to be treated with a banquet dinner at the Quebec Parliament at the end of the conference. Well done, all!
Participants of the LFC48 at the meeting room at the Hotel Concorde
Conference banquet at the Quebec City Parliament
Hannes and Lucas at the revolving restaurant "La Ciel" on top of the hotel
Oral and Poster Presentations at LFC48
Jones, L.F., Schembri, S., Bouchard, C., and Baumann, H. 2025. What sand lance species inhabits the Hudson Bay System in the Canadian Arctic? Oral presentation.
You, V., Batta-Lona, P., O'Donnell, T., and Baumann, H. 2025. Identifying sand lance species and their distributions in the Northwest Atlantic using real-time PCR (qPCR). Poster. /li>
Jones, L.F., Murray, C.S., Zavell, M.D., Siegfried, E., Therkildsen, N.O., and Baumann, H. 2025. Is there a genomic basis to CO2 sensitivity in the Northern sand lance? Poster.
Siegfried, E. and Baumann, H. 2025. Temperature effects on the time to hatch in American sand lance (Ammodytes americanus). Poster.
Quebec City and the mighty St. Lawrence River at night
Fish that swam next to the dinosaurs are once again appearing in CT waters
After sightings of young sturgeon were reported, CT DEEP researcher Kelli Mosca ’22 MS and Professor Hannes Baumann began researching whether these ancient fish are making a comeback in the Connecticut River. (Credit Jacob Snyder)
By Elaina Hancock
For 160 million years, long-lived and highly migratory Atlantic sturgeons have made their way from the ocean to freshwater spawning grounds inland. The Connecticut River was one of the waterways sturgeon sought out – that is, until they were fished nearly to extinction in the early 20th century.
In 2014, however, researchers from the CT Department of Energy and Environmental Protection (CT DEEP) caught a few juvenile sturgeons in the Connecticut River, implying that sturgeons were spawning there again. More little sturgeon appeared in 2020 and again in 2022, leading some to wonder if this iconic fish that swam next to the dinosaurs was indeed making a comeback in our regional waters.
A new study from UConn professors Hannes Baumann from the Department of Marine Sciences and Eric Schultz from the Department of Ecology and Evolutionary Biology, in collaboration with researchers from CT DEEP including Kelli Mosca ’22 MS, Jacque Roberts, Thomas Savoy and Evan Ingram from Stony Brook University, shows that we have much to learn about sturgeons and that it may not be too late to give them a chance for recovery. Their findings are published in the National Oceanic and Atmospheric Administration’s open access journal, Fishery Bulletin.
CT Deep researchers including Jacque Roberts, pictured here, used acoustic telemetry to track the movements of sturgeons. For telemetry, the fish were equipped with a small transponder and CT DEEP responders mounted throughout the Connecticut River recorded signals whenever fish swam near. (Credit Jacob Snyder)
Baumann says the project started at a conference in 2019, when he connected with researchers at CT DEEP who pitched a potential collaboration with Mosca, who was a CT DEEP seasonal resource assistant at the time and was hoping to pursue a graduate degree and focus her research on sturgeon. Despite these sightings, Baumann says he was skeptical that the fish were having a comeback, but he was interested in the project.
“These fish spawn in freshwater and then they develop until they are about 50 centimeters in size, then they travel to the ocean so if you find a little sturgeon in the Connecticut River, it must have been born there,” says Baumann. “We know there are sturgeon entering the Connecticut River; then the question is, how far do they go?”
For the project, Baumann secured funding from Connecticut Sea Grant, Mosca joined Baumann’s lab, and they started analyzing data to study sturgeon movement in the Connecticut River.
In 1998, sturgeons became a protected species but only after their situation had become dire. They are now heavily regulated, and even getting permits for research is not an easy task, says Baumann.
The researchers took samples of their pectoral fins that indicate the fish’s approximate age. Mosca looked at samples taken from the fish to determine the age,
“Ageing fish is often compared to ageing trees, in the sense that just as trees gain a ring in their trunk for each year they’re alive, a fish adds what we call an annulus (ring) to various hard parts in their body each year they are alive. In sturgeon’s case, they are not fully calcified, meaning there are not many hard bones to choose from to age. However, a small piece of their pectoral fin is hard enough to create those rings and can thankfully regrow so there is no deleterious effect on the fish. I am thankful to have access to such a large archive of these samples, which are rare given the endangered status of this species,” says Mosca.
People have also tagged these fish with acoustic transmitters, a specialized tag that send out a signal which is then picked up by listening equipment called receivers. CT DEEP deploys receivers anchored along the Connecticut River and within Long Island Sound that record the tag data as tagged sturgeon swim by.
The researchers used data on tracked sturgeons over the course of the three-year study, and over that period, sturgeons were detected as far upriver as Wilcox Island (Middletown, at river kilometer 52).
Abacus plots (left) allows following the seasonal movement of individual fish along the Connecticut River receiver array, from the mouth of LIS, to the brackish estuary and into the fresh, upper river. A Kernel density plot (right) is used to visualize the habitat occupancy of many telemetered individuals.
“In theory, it’s all very easy, you just have to download the data and look where the sturgeon are,” says Baumann. “In practice, there are lots of statistics and analytical steps to properly assess these data. There were something like 1.5 million detections, over the three years in total, so 1.5 million rows of data, where every ping was a sturgeon somewhere. This corresponded to 85 individuals tracked over three years.”
Tracking animals in this way is called acoustic telemetry, and Baumann says the technology has profoundly changed our understanding of animal movements in the wild. There were some surprises in this one, he notes.
“Instead of just episodic accounts of single individuals, this study stands out for the large number of tracked fish,” says Baumann. “It showed that sturgeons generally arrive in the estuary in spring and leave in fall and that most stay in the brackish estuary. But intriguingly, a lot of the fish are indeed making these long upstream excursions into the freshwater. Why would they do this?”
Baumann says that the initial, most intuitive explanation of the fish displaying spawning migrations appeared unlikely after closer inspection. This is because most of the fish were not of adult size and age and, therefore, too young to spawn.
“We always thought Atlantic sturgeon are only in the estuary when they are young, and it is only when they want to spawn that they go into the freshwater. But that appears to be false. Our study shows that almost every size of sturgeon travelled into the freshwater portion of the Connecticut River. We had two individuals in our data set who were 18 years old. Most of the fish that we caught were younger than 12 years, and the average was about eight years, so they’re youngsters,” says Baumann.
The data therefore revealed that Atlantic sturgeons are using the entire Connecticut River, not just the estuary. Baumann says their working theory is that the fish are exploring other areas to find food, since the estuary can become crowded in the summer.
“In the paper, we advanced a theory that some of these Atlantic sturgeons move further up the river due to competition because it’s getting too crowded. The gist is we now know that we need to protect sturgeons at least during these important summer months, when they are in the entire Connecticut River.”
These findings are promising and important for ensuring measures are in place to help give the sturgeons the best chance possible at making a recovery. Though Baumann cannot say with certainty that the population is growing, a hopeful indication is that sightings of juveniles likely born in the River are happening more frequently.
“The sightings are still very sporadic and sort of ephemeral, but perhaps it’s a start.”
Protecting a highly mobile species like sturgeons can be tricky because they recognize no borders. Therefore, it takes national, federal, and international cooperation, but other measures are also important to ensure people are aware of their presence to help reduce accidental boat strikes or bycatch in commercial fisheries.
“From a logical perspective, they have been fished to quasi extinction in the beginning of the 20th century. Indeed, it would be a small miracle if these fish came back,” says Baumann. “At the end of the day, they made it 160 million years, and we need to just give them a chance to make it another 100. It doesn’t take much. It does take time, but if we allow it, I’m convinced that nature will find a way.”
Length (upper panel) and age distributions (lower panel) of Atlantic sturgeon in Long Island Sound and the Connecticut River (modified after Mosca et al. 2025)
25 January 2025. We are proud to share that the journal Environmental Biology of Fishes just published our latest sand lance research - this time involving specimen samples from the Canadian Arctic! And it's a story that has all the hallmarks of how scientist collaborate and how such collaborations can evolve and widen over time.
About 5 years ago, we began to receive samples of sand lance from Canadian colleagues who had collected them in places such as the Grand Banks, the Gulf of Saint Lawrence and even in coastal waters of western Greenland. When these samples were compared genetically to sand lance in the south (e.g. Stellwagen Bank) study, it revealed the existence of two large population clusters of Northern sand lance (Ammodytes dubius) on the Northwest Atlantic shelf (Jones et al. 2023). It was also the first genetic study of Lucas Jones, and it earned him his Masters degree in 2022.
A few years later, our Canadian colleague Caroline Bouchard approached us with a related problem. They had collected larval sand lance samples by ship tows in the Hudson Bay - the famously vast, shallow shelf sea in the Canadian Arctic - but there was no way to identify them to species level with traditional tools. If we might be interested to have a - genomic - look?
Lucas - now a PhD student - sure was. After DNA was extracted and sequenced in the same way as with the other samples before (i.e., low coverage whole genome sequencing), he applied his already developed bioinformatic pipeline to answer the question, which sand lance species inhabits the Hudson Bay?
So here it is. As the now published, first chapter of his PhD research reports - the findings were surprisingly unequivocal. All samples clustered with (i.e., were genomically indistinguishable from) the Northern sand lance (A. dubius).
This, we argue in the paper, demonstrated two things: First, the northern genotype of A. dubius forms a genetically homogeneous population across an astoundingly large geographic range of > 2 million km2, and second, there does not (yet?) appear to be any sign of Pacific sand lance species mixing in with the Atlantic species in this region.
Congrats, Lucas, and fingers crossed for your next discoveries of sand lance genomics!
Map of the Canadian Arctic with the Hudson Bay and Hudson Strait. Unknown Ammodytes spp. (red circles) were sampled 2010–2018 and identified as A. dubius using whole genome sequencing (gif turning into blue circles). Known congeners from Jones et al. (2023) with blue circles/shading showing the putative range and sampling sites for Northern sand lance (A. dubius) comprised of a northern cluster (NC, dark blue circles) and a southern cluster (SC, light blue circles), the grey square denoting American sand lance (A. americanus) sampled from a nearshore site in the Gulf of Maine, and yellow diamond/shading denoting the putative range/sampling site for the Pacific sand lance (A. personatus). Green shading depicts putative occurrence of the Arcto-Pacific congener A. hexapterus, which has recently invaded the Canadian Arctic (green circles, Falardeau et al. 2017)
22 November 2024. We are happy to share that our paper on black sea bass stomach content metabarcoding has been published today in the traditional NOAA journal Fishery Bulletin. Our study used black sea bass juveniles caught in Mumford Cove to study their diet via a molecular approach known as metabarcoding. This method often detects rare or soft-bodied prey better than traditional morphological content analyses. We found that small, newly settled black sea bass eat mostly shrimp, but also many softbodied polychaetes. And weirdly, they seem to like one particular kind of (invasive) amphipod. Only larger juveniles seem to add fish to their diet.
Our study is a great first collaboration between our departments genomic experts (Ann Bucklin, Paola Batta-Lona) and the Evolutionary Fish Ecology Lab. The first product of our collaborative efforts has seen the light!
Fishery Bulletin is the 143 years old peer-reviewed journal managed and published by the National Marine Fisheries Service (NMFS) of the National Ocean and Atmospheric Administration (NOAA). It publishes Open Access at no costs to authors. Click the link below to download the paper.
Composition of prey detected in samples from stomachs of juvenile black sea bass (Centropristis striata), collected in Mumford Cove off Connecticut in August 2020, through metabarcoding with (A) the mitochondrial cytochrome c oxidase subunit I (COI) gene region and (B) the V9 hypervariable region of 18S rRNA. Bars represent the total number of COI and V9 gene sequences identified for each of 6 and 10 major prey taxa in DNA samples from 35 and 99 stomachs, respectively. In panel A, lists / pictures of the major prey species and their relative proportions for each prey taxon are provided (modified after Figure 1 in Batta-Lona et al. 2025)
12 June 2024. We are excited to share that Environmental Biology of Fishes just published our study on the CO2 sensitivity of Black Sea Bass early life stages! The experimental work was part of Max Zavell's PhD-research and required the development of new approaches for obtaining spawning adults, new rearing methods, and new techniques for quantifying hatchlings and feeding larvae.
In the end, our research extends earlier experimental work to show that Black Sea Bass embryos and larvae are surprisingly tolerant to even extreme pCO2 conditions - which means that this species is likely resistant to the direct (!) effects of ocean acidification. Scientifically, this is intriguing because it points to some form of pre-adaptation that adults confer to their offspring in a manner we just don't understand yet.
Congrats, Max, to another chapter of your thesis published!
Black Sea Bass early life stages, developing rapidly at 20C
Hatching success of black sea bass embryo exposed to different pCO2 conditions (modified after Zavell & Baumann 2024)
17 May 2024. Members of our Evolutionary Fish Ecology Lab had a blast attending this years 47th Larval Fish Conference in Huron, OH. Hannes, Emma, Max and alumnus Chris Murray (now at WHOI), went on a road trip from Connecticut to Lake Eerie to present and learn about all things larval fish. On Tuesday morning, the conference crowd enjoyed excursion or recreation options, all the while catching up with good old colleagues and making new connections and friends. A particular achievement: each of us presented research on a different fish species; while Hannes showed the first data emerging from his sabbatical research on Chilean silversides, Emma talked about baby California grunion development. Max presented a poster and two talks, the first about CO2 effects on the onset of schooling in Atlantic silversides and a second one one Black Sea Bass overwintering dynamics. Last, Chris Murray gave a fascinating first look into gene expression data from our most recent sand lance CO2 experiment. All around, a strong showing of our lab!
Contributions from our lab to the 47th Larval Fish Conference in Huron, OH
Baumann, H., Gallardo, A., Gallardo, C., and Urbina, M. 2024. First evidence for countergradient growth variation in the Chilean silverside Odontesthes regia. Oral presentation
Siegried, E. and Johnson, D. 2024. Eyes bigger than your stomach: developmental inaccuracy in larval California grunion. Oral presentation.
Zavell, M.D., Mouland, M., Barnum, D., Matassa, C., Schultz, E.T., and Baumann, H. 2024. Overwintering dynamics of northern stock Black Sea Bass, Centropristis striata, juveniles. Oral presentation.
Zavell, M.D., O'del, J., Mouland, M., Webb, J.F., and Baumann, H. 2024. Ontogeny of larval schooling and effects of ocean acidification in Atlantic Silversides (Menidia menidia). Oral presentation.
Murray, C.S., Jones, L., Siegfried, E., Zavell, M.D., Baumann, Z., Wiley, D., Therkildsen, N., Aluru, N., and Baumann, H. 2024. Examining the effect of ocean acidification on hatching enzyme gene expression in Northern sand lance (Ammodytes dubius). Oral presentation.
Long-time attendees of the LFC happy to meet again (fltr: Pascal Sirois, Dominique Robert, Hannes Baumann, Chris Chambers, Bill Leggett)
Proud members of the lab at the end of the LFC47
Extensive fields of water lilies in the Huron River, OH
A nice break from conference science, kayaking the Huron River
18 April 2024. Today we are happy and proud to announce that Max Zavell has successfully defended his dissertation titled "Experimental assessment of ocean warming and acidification effects on multiple life stages of Black Sea Bass, Centropristis striata". A big, heartfelt congratulations from the entire lab!
Max Zavell had started as a PhD student in our lab in fall 2020, and his thesis research broke new ground by working experimentally with Black Sea Bass, a grouper species of great interest because of its recent, explosive increase in abundance in Long Island Sound and the larger northwest Atlantic shelf. Over two fall and winter seasons, Max conducted ambitious long-term rearing experiments on juveniles and adults to study how overwintering could be the key to understand these new dynamics. Now, after only three and a half years, Max has stepped up to the plate and showed his peers and colleagues the fruits of the work.
We were particularly delighted that all this committee members - Profs. Jacqueline Webb (URI), Catherine Matassa (UConn), and Eric Schultz (UConn) - were able to attend in person!
Well done, Max! Your team spirit and unwavering energy will be missed! We wish you all the best for your next career steps!
On April 18th, Max begins presenting his PhD research at UConn's Department of Marine Sciences
Done! Max and Hannes savor a moment of pride in the Rankin Lab
Max Zavell and Matt Mouland, who were a great team in the Rankin Lab and beyond
Max with Hannes and Prof. Jacqueline Webb from the University of Rhode Island
Black Sea Bass have rapidly increased in abundance particularly in Long Island Sound (LIS Trawl survey data).
27 December 2023. We are excited to announce that Transactions of the American Fisheries Society just published our first large experimental study on Black Sea Bass overwintering! The work is part of Max Zavell's PhD research and reports on temperature- and food-ration dependent overwinter growth in Black Sea Bass juveniles from Long Island Sound. We reared juveniles individually in two separate experiments, one applying three static temperature treatments (6, 12, 19°C) and another using a seasonal temperature profile to mimic the thermal experience of juveniles emigrating to their offshore overwintering grounds coupled with various food treatments.
We found that Black Sea Bass juveniles showed positive overwinter growth even at temperatures as low as 6°C. However, the best temperature for growth, survival, and lipid accumulation was 12°C, which is close to the presumed conditions at offshore overwintering habitats of this species.
Congratulations, Max, to this great paper! Also, congrats to undergraduate student Matthew Mouland, who helped tirelessly with the rearing and has now deservedly become a co-author.
(A) total length (TL) growth (mm/day), (B) weight-specific growth (%/day), and (C) growth efficiency (%) of juvenile Black Sea Bass reared at 6°C (blue circles), 12°C (green circles), and 19°C (orange circles) for 42–78 days. Each symbol represents an individual fish.
Juvenile Black Sea Bass rearing setup in March 2022 in the Rankin Lab. Each white bucket contained an individual fish.
2 September 2022. After two grueling years of pandemic restrictions, Zoom conferences and meetings, the Baumann lab was as elated as anyone else to attend the first in-person conference again! Hannes & Max went to beautiful La Jolla in San Diego to participate in this years 45th Larval Fish Conference (Aug 29 - Sep 2). The stunning setting of the Scripps campus amidst the sound of the Pacific Ocean breeze provided the right kind of backdrop to again mingle with colleagues, meet fellow graduate students for scientific and just fun discussions, while an eclectic number of talks across the spectrum of Larval Fish and Larval Biology renewed the inspiration for our science. Hannes gave a keynote about our recently published work on sand lance CO2 sensitivity, while Max presented his first conference talk about juvenile Black Sea Bass growth and energy allocation.
A big, heartfelt thanks to Noelle Bowlin (NOAA) and her team for pulling off this remarkable conference during these still uncertain, post-COVID times!
On 29 August 2022, LFC45 participants mingle in front of the Pacific Ocean at the Scripps Auditorium (people from left to right: Lee Fuiman, Teresa Schwemmer, Max Zavell, Chris Chambers, Tom Hurst, Darren Johnson, Jeremy Miller).
On 30 August, Hannes talks about potential mechanisms of sand lance CO2 sensitivity
At the end of a day full of science, two conference participants enjoy the sunset over the Pacific Ocean
Participants of the 45th Larval Fish / Larval Biology Conference at the Scripps Campus on August 31st 2022
Baumann H. 2022. Why are sand lance embryos so sensitive to future high CO2 oceans? Keynote at the 45th Larval Fish Conference, San Diego 29 Aug - 1 Sep 2022
Zavell, M., Mouland, M., Schultz, E., and Baumann H. 2022. Overwinter growth and energy allocation of Black Sea Bass juveniles from Long Island Sound. 45th Larval Fish Conference, San Diego 29 Aug - 1 Sep 2022